{
  "_id": "6a1c00fc1d7bb097a0a295a7",
  "Package": "eCV",
  "Title": "Enhanced Coefficient of Variation and IDR Extensions for\nReproducibility Assessment",
  "Version": "0.0.2",
  "Authors@R": "c(person(\"Agustin\", \"Gonzalez-Reymundez\", email = \"agustin.gonrey@eclipsebio.com\", role = c(\"aut\", \"cre\")))",
  "Description": "Reproducibility assessment is essential in extracting\nreliable scientific insights from high-throughput experiments.\nWhile the Irreproducibility Discovery Rate (IDR) method has\nbeen instrumental in assessing reproducibility, its standard\nimplementation is constrained to handling only two replicates.\nPackage 'eCV' introduces an enhanced Coefficient of Variation\n(eCV) metric to assess the likelihood of omic features being\nreproducible. Additionally, it offers alternatives to the\nIrreproducible Discovery Rate (IDR) calculations for\nmulti-replicate experiments. These tools are valuable for\nanalyzing high-throughput data in genomics and other omics\nfields. The methods implemented in 'eCV' are described in\nGonzalez-Reymundez et al., (2023)\n<doi:10.1101/2023.12.18.572208>.",
  "URL": "https://github.com/eclipsebio/eCV",
  "BugReports": "https://github.com/eclipsebio/eCV/issues",
  "License": "GPL (>= 3)",
  "Encoding": "UTF-8",
  "VignetteBuilder": "knitr",
  "RoxygenNote": "7.2.1",
  "Language": "en-US",
  "Config/testthat/edition": "3",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-31 09:32:33 UTC",
    "User": "root"
  },
  "Author": "Agustin Gonzalez-Reymundez [aut, cre]",
  "Maintainer": "Agustin Gonzalez-Reymundez <agustin.gonrey@eclipsebio.com>",
  "Repository": "https://agugonrey.r-universe.dev",
  "Date/Publication": "2024-01-20 02:38:31 UTC",
  "RemoteUrl": "https://github.com/cran/eCV",
  "RemoteRef": "HEAD",
  "RemoteSha": "ca23528a35cc25c9113d9af30cd8e1381e815c80",
  "MD5sum": "9c7a9daab43d6b183dbb84c794eb2465",
  "_user": "agugonrey",
  "_type": "src",
  "_file": "eCV_0.0.2.tar.gz",
  "_fileid": "412528a4656e7ad5a07522627baa25712267278c36561098c8d34b41dfb10457",
  "_filesize": 1752085,
  "_sha256": "412528a4656e7ad5a07522627baa25712267278c36561098c8d34b41dfb10457",
  "_created": "2026-05-31T09:32:33.000Z",
  "_published": "2026-05-31T09:35:56.562Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 78715601707,
      "time": 148,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7315644505"
    },
    {
      "job": 78715601694,
      "time": 140,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7315643787"
    },
    {
      "job": 78715601699,
      "time": 170,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7315643440"
    },
    {
      "job": 78715601700,
      "time": 138,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7315640461"
    },
    {
      "job": 78715414540,
      "time": 193,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7315628978"
    },
    {
      "job": 78715601709,
      "time": 119,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7315641609"
    },
    {
      "job": 78715601705,
      "time": 94,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7315639199"
    },
    {
      "job": 78715601702,
      "time": 96,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7315639442"
    },
    {
      "job": 78715601708,
      "time": 94,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7315639118"
    }
  ],
  "_buildurl": "https://github.com/r-universe/agugonrey/actions/runs/26708928023",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/cran/eCV",
  "_commit": {
    "id": "ca23528a35cc25c9113d9af30cd8e1381e815c80",
    "author": "Agustin Gonzalez-Reymundez <agustin.gonrey@eclipsebio.com>",
    "committer": "cran-robot <csardi.gabor+cran@gmail.com>",
    "message": "version 0.0.2\n",
    "time": 1705718311
  },
  "_maintainer": {
    "name": "Agustin Gonzalez-Reymundez",
    "email": "agustin.gonrey@eclipsebio.com",
    "login": "agugonrey",
    "linkedin": "in/agustin-gon-rey",
    "description": "",
    "uuid": 65627710
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.5.0",
      "role": "Depends"
    },
    {
      "package": "idr",
      "version": ">= 1.3",
      "role": "Depends"
    },
    {
      "package": "mvtnorm",
      "version": ">= 1.1.3",
      "role": "Depends"
    },
    {
      "package": "future",
      "version": ">= 1.4.0",
      "role": "Depends"
    },
    {
      "package": "future.apply",
      "version": ">= 1.9.0",
      "role": "Depends"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "utils",
      "role": "Imports"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    },
    {
      "package": "tidyverse",
      "role": "Suggests"
    }
  ],
  "_owner": "cran",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_stars": 0,
  "_contributors": [
    {
      "user": "agugonrey",
      "count": 2,
      "uuid": 65627710
    }
  ],
  "_userbio": {
    "uuid": 65627710,
    "type": "user",
    "name": "Agustin Gonzalez-Reymundez"
  },
  "_downloads": {
    "count": 293,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/eCV"
  },
  "_devurl": "https://github.com/eclipsebio/ecv",
  "_searchresults": 1,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/eCV.html",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_realowner": "agugonrey",
  "_cranurl": false,
  "_releases": [
    {
      "version": "0.0.1",
      "date": "2024-01-08"
    },
    {
      "version": "0.0.2",
      "date": "2024-01-19"
    }
  ],
  "_exports": [
    "eCV",
    "gIDR",
    "mIDR",
    "mrep_assessment",
    "simulate_data"
  ],
  "_help": [
    {
      "page": "eCV",
      "title": "Assess Reproducibility via Enhanced Coefficient of Variation",
      "topics": [
        "eCV"
      ]
    },
    {
      "page": "gIDR",
      "title": "Estimate IDR with a General Mixture Model",
      "topics": [
        "gIDR"
      ]
    },
    {
      "page": "mIDR",
      "title": "Estimate meta Irreproducible Discovery Rate (mIDR).",
      "topics": [
        "mIDR"
      ]
    },
    {
      "page": "mrep_assessment",
      "title": "Multi-replicate Reproducibility Assessment.",
      "topics": [
        "mrep_assessment"
      ]
    },
    {
      "page": "simulate_data",
      "title": "Simulates omic features into reproducible and irreproducible groups",
      "topics": [
        "simulate_data"
      ]
    }
  ],
  "_readme": "https://github.com/cran/eCV/raw/HEAD/README.md",
  "_rundeps": [
    "codetools",
    "digest",
    "future",
    "future.apply",
    "globals",
    "idr",
    "listenv",
    "mvtnorm",
    "parallelly"
  ],
  "_vignettes": [
    {
      "source": "eCV_vignette.Rmd",
      "filename": "eCV_vignette.html",
      "title": "Introduction to the eCV package",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Welcome!",
        "Installation",
        "Load package eCV",
        "Usage examples",
        "Simulate data: function simulate_data",
        "Assessing feature reproducibility with different methods: function mrep_assessment",
        "References"
      ],
      "created": "2024-01-09 02:41:26",
      "modified": "2024-01-20 02:38:31",
      "commits": 2
    }
  ],
  "_score": 2.6989700043360187,
  "_indexed": true,
  "_nocasepkg": "ecv",
  "_universes": [
    "agugonrey",
    "eclipsebio"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.0.2",
      "date": "2026-05-31T09:34:59.000Z",
      "distro": "noble",
      "commit": "ca23528a35cc25c9113d9af30cd8e1381e815c80",
      "fileid": "060da0565dfdceed7152309f5288cd1a5cfd1dd552ea499a5e2cd3f54f107ae4",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/agugonrey/actions/runs/26708928023"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "0.0.2",
      "date": "2026-05-31T09:34:53.000Z",
      "distro": "noble",
      "commit": "ca23528a35cc25c9113d9af30cd8e1381e815c80",
      "fileid": "df562d7d97fdc0a576b38d9be9ca852f22fd579c1de57bff8c381416c5877206",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/agugonrey/actions/runs/26708928023"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.0.2",
      "date": "2026-05-31T09:34:54.000Z",
      "commit": "ca23528a35cc25c9113d9af30cd8e1381e815c80",
      "fileid": "9e8e7210790c6dcaaf32135de9b0d886484cc089ffce5e62dd235b3404dd7ff7",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/agugonrey/actions/runs/26708928023"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "0.0.2",
      "date": "2026-05-31T09:34:25.000Z",
      "commit": "ca23528a35cc25c9113d9af30cd8e1381e815c80",
      "fileid": "55e64d290e8ab02ca60f4287407736898de9a42f20794f0e8b137b75d1b1839b",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/agugonrey/actions/runs/26708928023"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.0.2",
      "date": "2026-05-31T09:34:50.000Z",
      "commit": "ca23528a35cc25c9113d9af30cd8e1381e815c80",
      "fileid": "4cc0f38003b4bea9cb6f800b03318c3c1d35138014f95fbdce949e76748cefb9",
      "status": "success",
      "buildurl": "https://github.com/r-universe/agugonrey/actions/runs/26708928023"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.0.2",
      "date": "2026-05-31T09:34:05.000Z",
      "commit": "ca23528a35cc25c9113d9af30cd8e1381e815c80",
      "fileid": "31fb113884a0f9441d468535d5bb40a141a19fb5d79cc985dd8f6068212b4f35",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/agugonrey/actions/runs/26708928023"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.0.2",
      "date": "2026-05-31T09:34:05.000Z",
      "commit": "ca23528a35cc25c9113d9af30cd8e1381e815c80",
      "fileid": "6534f2627ff51b8cf77416b8befc27559d686f1c8f6360c138180db87da80bfe",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/agugonrey/actions/runs/26708928023"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "0.0.2",
      "date": "2026-05-31T09:34:00.000Z",
      "commit": "ca23528a35cc25c9113d9af30cd8e1381e815c80",
      "fileid": "73380fac503643c43e111bb0dd4a22c860c70029f47023c7ec549512fb2db4b1",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/agugonrey/actions/runs/26708928023"
    }
  ]
}